Basic Information
Locus ID:
gene-QOZ80_2AG0119610
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 22162612 | 22172373 | - | gene-QOZ80_2AG0119610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 112,869.26 Da | 34.28 | 80.56 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 47 | 324 | 8.23482E-177 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 906 | 1011 | 1.7E-8 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 48 | 360 | 1.7E-94 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 612 | 824 | 5.8E-52 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 365 | 455 | 2.2E-17 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 364 | 458 | 1.73E-25 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 42 | 362 | 6.35E-111 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 461 | 1014 | 1.57E-146 | IPR011013 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 47 | 328 | 5.7E-119 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 606 | 872 | 9.6E-103 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 408 | 463 | 6.0E-19 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 893 | 1014 | 3.0E-33 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 329 | 407 | 1.3E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 473 | 584 | 1.4E-25 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 365 | 439 | 1.9E-19 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | C5WP48 | Alpha-mannosidase OS=Sorghum bicolor OX=4558 GN=SORBI_3001G268700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology