Basic Information
Locus ID:
gene-QOZ80_2AG0117140
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 15782300 | 15818077 | - | gene-QOZ80_2AG0117140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 471,412.56 Da | 43.90 | 87.65 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3188 | 3347 | 3.0E-10 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 109 | 2.2E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 554 | 766 | 3.0E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1982 | 2124 | 1.4E-13 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 4.2E-65 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2201 | 2347 | 5.4E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4079 | 4168 | 1.9E-9 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 804 | 901 | 1.58E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1517 | 1538 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_034571744.1 | uncharacterized protein LOC117836430 isoform X1 [Setaria viridis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V822 | PH domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_23340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology