halophFGD

Basic Information

Locus ID: gene-QOZ80_2AG0115780

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2A	13995067	13997776	-	gene-QOZ80_2AG0115780

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.34	52,168.99 Da	63.08	87.86	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01989	STK_N	6	161	1.06357E-46	-
CDD	cd16655	RING-Ubox_WDSUB1_like	390	431	1.74981E-20	-
Pfam	PF04564	U-box domain	386	456	4.1E-16	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	382	458	1.15E-22	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	385	462	9.7E-25	IPR013083
SMART	SM00504	Ubox_2	389	452	8.2E-24	IPR003613
ProSiteProfiles	PS51698	U-box domain profile.	385	459	26.547712	IPR003613
Coils	Coil	Coil	213	233	-	-
Coils	Coil	Coil	237	292	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G61390.2	RING/U-box superfamily protein.
RefSeq	XP_039832859.1	U-box domain-containing protein 36-like [Panicum virgatum]
Swiss-Prot	Q8GZ84	U-box domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=PUB36 PE=2 SV=2
TrEMBL	A0A5J9V8I4	U-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_23482 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1927, jg2286, jg29359
Aizoaceae	Mesembryanthemum crystallinum	4	gene_16140, gene_1698, gene_1699, gene_1700
Amaranthaceae	Atriplex hortensis	4	Ah022999, Ah023000, Ah023003, Ah026927
Amaranthaceae	Beta vulgaris	7	BVRB_1g004560, BVRB_1g004570, BVRB_1g004590, BVRB_1g004600 ... BVRB_1g004610, BVRB_1g004620, BVRB_3g055100
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg38402, Sbi_jg4507, Sbi_jg4511, Sbi_jg4512, Sbi_jg49407 ... Sbi_jg49409, Sbi_jg49410, Sbi_jg6509
Amaranthaceae	Salicornia europaea	4	Seu_jg15408, Seu_jg5923, Seu_jg5925, Seu_jg5926
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00000444, GOSA_00000445, GOSA_00000446, GOSA_00000447 ... GOSA_00006500
Amaranthaceae	Suaeda glauca	14	Sgl01957, Sgl07113, Sgl11066, Sgl11067, Sgl11069, Sgl11070 ... Sgl11071, Sgl11072, Sgl16474, Sgl16475, Sgl16481, Sgl16483, Sgl16484, Sgl16485
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000004247, gene:ENSEOMG00000013828 ... gene:ENSEOMG00000015346, gene:ENSEOMG00000025320, gene:ENSEOMG00000031798, gene:ENSEOMG00000032904, gene:ENSEOMG00000034205, gene:ENSEOMG00000034655, gene:ENSEOMG00000035157, gene:ENSEOMG00000036136, gene:ENSEOMG00000036721, gene:ENSEOMG00000047518, gene:ENSEOMG00000048036, gene:ENSEOMG00000050091
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0002930, CQ.Regalona.r1.2BG0024870 ... CQ.Regalona.r1.2BG0024880, CQ.Regalona.r1.2BG0024890, CQ.Regalona.r1.3AG0003050, CQ.Regalona.r1.3BG0003310, CQ.Regalona.r1.4AG0016310, CQ.Regalona.r1.6AG0020690, CQ.Regalona.r1.6BG0021750
Anacardiaceae	Pistacia vera	3	pistato.v30004550, pistato.v30004570, pistato.v30182970
Apiaceae	Apium graveolens	4	Ag2G02024, Ag6G00182, Ag6G01591, AgUnG01431
Arecaceae	Cocos nucifera	3	COCNU_07G011370, COCNU_08G010440, COCNU_09G007890
Arecaceae	Phoenix dactylifera	4	gene-LOC103698606, gene-LOC103705579, gene-LOC103717427 ... gene-LOC120103911
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.2106.V1.1, AsparagusV1_Unassigned.220.V1.1 ... AsparagusV1_Unassigned.221.V1.1, AsparagusV1_Unassigned.222.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G00277, Ftri7G01165
Brassicaceae	Arabidopsis thaliana	5	AT2G45910.1, AT2G45920.1, AT3G49060.1, AT3G61390.2 ... AT3G61410.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10001310m.g.v1.0, Thhalv10006399m.g.v1.0 ... Thhalv10006400m.g.v1.0, Thhalv10010130m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g00650.v2.2, Sp1g00660.v2.2, Sp4g27980.v2.2 ... Sp4g27990.v2.2, Sp5g01990.v2.2, Sp5g02000.v2.2, Sp5g02010.v2.2, Sp5g13010.v2.2
Brassicaceae	Brassica nigra	12	BniB01g001180.2N, BniB01g001190.2N, BniB03g061970.2N ... BniB06g004290.2N, BniB06g004300.2N, BniB06g009850.2N, BniB06g053220.2N, BniB06g062030.2N, BniB06g062040.2N, BniB08g062310.2N, BniB08g075520.2N, BniB08g075530.2N
Casuarinaceae	Casuarina equisetifolia	20	Ceq01G0562, Ceq01G0564, Ceq01G0565, Ceq01G0569, Ceq05G0386 ... Ceq05G0387, Ceq05G0388, Ceq05G0390, Ceq05G0393, Ceq05G0395, Ceq05G0399, Ceq05G0401, Ceq05G0403, Ceq05G0404, Ceq05G0407, Ceq05G1208, Ceq05G1209, Ceq05G1211, Ceq05G1213, Ceq09G1454
Casuarinaceae	Casuarina glauca	19	Cgl01G0644, Cgl01G0645, Cgl01G0646, Cgl01G0647, Cgl01G0650 ... Cgl04G0110, Cgl05G0088, Cgl05G0089, Cgl05G0401, Cgl05G0402, Cgl05G0403, Cgl05G0405, Cgl05G0406, Cgl05G0409, Cgl05G1219, Cgl05G1220, Cgl05G1221, Cgl05G1222, Cgl09G1547
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g00930, gene.Cymno02g09510, gene.Cymno03g06020 ... gene.Cymno06g13400, gene.Cymno10g02580, gene.Cymno10g02590, gene.Cymno10g02600, gene.Cymno14g01100
Hydrocharitaceae	Thalassia testudinum	9	gene.Thate01g06730, gene.Thate02g28560, gene.Thate03g11000 ... gene.Thate03g15190, gene.Thate07g05560, gene.Thate08g01700, gene.Thate08g01710, gene.Thate08g11100, gene.Thate08g22530
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-2802, nbisL1-mrna-2804
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2746, evm.TU.LG04.861
Plantaginaceae	Plantago ovata	4	Pov_00016715, Pov_00031928, Pov_00031933, Pov_00040981
Plumbaginaceae	Limonium bicolor	13	Lb0G38372, Lb0G38373, Lb1G03520, Lb1G03521, Lb1G03523 ... Lb1G03524, Lb1G03963, Lb1G03964, Lb1G04003, Lb1G05483, Lb2G11070, Lb2G11073, Lb2G11079
Poaceae	Echinochloa crus-galli	22	AH01.3004, AH01.3006, AH03.1123, AH03.1124, AH07.2917 ... AH07.2921, BH01.3336, BH01.3337, BH01.3341, BH03.1287, BH03.1288, BH07.2740, BH07.2741, BH07.2742, BH07.2743, CH01.3583, CH01.3586, CH03.1387, CH03.1443, CH03.1447, CH07.2814, CH07.2815
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0115760, gene-QOZ80_2AG0115780 ... gene-QOZ80_2AG0140160, gene-QOZ80_2BG0169630, gene-QOZ80_2BG0169650, gene-QOZ80_2BG0195820, gene-QOZ80_2BG0195830, gene-QOZ80_4AG0307630, gene-QOZ80_4BG0338650, gene-QOZ80_6AG0525150, gene-QOZ80_6AG0525170
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0055700.1, HORVU.MOREX.r3.1HG0055720.1 ... HORVU.MOREX.r3.1HG0055740.1, HORVU.MOREX.r3.5HG0495240.1, HORVU.MOREX.r3.5HG0495250.1, HORVU.MOREX.r3.6HG0602140.1
Poaceae	Lolium multiflorum	14	gene-QYE76_012484, gene-QYE76_012486, gene-QYE76_012488 ... gene-QYE76_029937, gene-QYE76_029938, gene-QYE76_038239, gene-QYE76_038240, gene-QYE76_038241, gene-QYE76_038251, gene-QYE76_038252, gene-QYE76_049683, gene-QYE76_049685, gene-QYE76_049694, gene-QYE76_071986
Poaceae	Oryza coarctata	8	Oco03G017560, Oco04G018310, Oco17G012270, Oco19G009530 ... Oco19G009550, Oco19G009700, Oco20G009450, Oco20G009470
Poaceae	Oryza sativa	6	LOC_Os09g39620.1, LOC_Os09g39640.1, LOC_Os10g40060.1 ... LOC_Os10g40100.1, LOC_Os10g40120.1, LOC_Os10g40490.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G294000, gene-BS78_01G294200 ... gene-BS78_02G134200, gene-BS78_02G134600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0205954, Pt_Chr0403833, Pt_Chr0403883, Pt_Chr0405242 ... Pt_Chr0503115, Pt_Chr0503117, Pt_Chr0503150, Pt_Chr0503153, Pt_Chr0503154, Pt_Ctg00317, Pt_Ctg00318
Poaceae	Sporobolus alterniflorus	13	Chr06G005580, Chr06G028270, Chr09G004400, Chr09G004420 ... Chr10G005450, Chr10G005460, Chr11G013750, Chr13G020510, Chr13G020530, Chr15G007210, Chr15G018730, Chr15G019520, Chr21G008490
Poaceae	Thinopyrum elongatum	10	Tel1E01G357300, Tel1E01G357600, Tel4E01G012800 ... Tel4E01G012900, Tel4E01G573700, Tel4E01G574000, Tel4E01G574100, Tel5E01G471100, Tel5E01G471200, Tel6E01G461500
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG031360, gene_TRIDC1AG031380 ... gene_TRIDC1AG031400, gene_TRIDC1BG036730, gene_TRIDC1BG036820, gene_TRIDC1BG036860, gene_TRIDC4AG047370, gene_TRIDC4BG001240, gene_TRIDC5AG044080, gene_TRIDC5BG048050, gene_TRIDC5BG048060, gene_TRIDC6AG037910, gene_TRIDC6AG050680, gene_TRIDC6BG003080, gene_TRIDC6BG044860, gene_TRIDC6BG059270
Poaceae	Triticum aestivum	23	TraesCS1A02G207800.1, TraesCS1A02G207900.1 ... TraesCS1A02G208100.1, TraesCS1B02G221500.1, TraesCS1B02G221900.1, TraesCS1B02G222200.1, TraesCS1D02G211100.1, TraesCS1D02G211200.1, TraesCS1D02G211400.1, TraesCS4B02G350300.1, TraesCS4D02G003800.1, TraesCS5A02G294600.1, TraesCS5A02G294700.1, TraesCS5B02G293900.1, TraesCS5B02G294000.1, TraesCS5D02G302000.1, TraesCS5D02G302100.1, TraesCS6A02G245500.1, TraesCS6A02G338300.1, TraesCS6B02G278900.1, TraesCS6B02G368900.1, TraesCS6D02G227900.1, TraesCS6D02G319000.1
Poaceae	Zea mays	3	Zm00001eb022810_P002, Zm00001eb022920_P001 ... Zm00001eb186860_P001
Poaceae	Zoysia japonica	6	nbis-gene-22343, nbis-gene-22344, nbis-gene-31811 ... nbis-gene-47009, nbis-gene-47010, nbis-gene-53375
Poaceae	Zoysia macrostachya	7	Zma_g15632, Zma_g15633, Zma_g16830, Zma_g20222, Zma_g29844 ... Zma_g31405, Zma_g32024
Portulacaceae	Portulaca oleracea	11	evm.TU.LG04.2255, evm.TU.LG04.2274, evm.TU.LG04.2275 ... evm.TU.LG06.33, evm.TU.LG06.34, evm.TU.LG11.1642, evm.TU.LG19.924, evm.TU.LG19.925, evm.TU.LG19.927, evm.TU.LG24.927, evm.TU.LG24.929
Posidoniaceae	Posidonia oceanica	11	gene.Posoc02g13810, gene.Posoc02g13850, gene.Posoc02g13880 ... gene.Posoc02g13900, gene.Posoc03g01950, gene.Posoc03g01960, gene.Posoc06g05730, gene.Posoc06g05760, gene.Posoc06g05770, gene.Posoc06g05780, gene.Posoc06g05800
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1408, evm.TU.Scaffold_9_RagTag.504
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12699, nbisL1-mrna-21632
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19077, nbisL1-mrna-1920, nbisL1-mrna-5533
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-22421, nbisL1-mrna-7330
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.262, evm.TU.utg000010l.385
Rhizophoraceae	Kandelia obovata	2	Maker00008809, Maker00017690
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1088, nbisL1-mrna-1761
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19631, nbisL1-mrna-20577
Salicaceae	Populus euphratica	6	populus_peu27691, populus_peu27692, populus_peu27693 ... populus_peu30661, populus_peu31660, populus_peu31661
Solanaceae	Lycium barbarum	2	gene-LOC132631932, gene-LOC132645572
Solanaceae	Solanum chilense	2	SOLCI001350600, SOLCI004625900
Solanaceae	Solanum pennellii	2	gene-LOC107007977, gene-LOC107015310
Tamaricaceae	Reaumuria soongarica	6	MSTRG.13959_chr08_+, MSTRG.19974_chr11_+, gene_1424 ... MSTRG.19976_chr11_-, gene_15233, gene_4158
Tamaricaceae	Tamarix chinensis	6	TC03G2242, TC03G2251, TC03G2252, TC06G2369, TC09G2217 ... TC09G2218
Zosteraceae	Zostera marina	3	Zosma03g26770.v3.1, Zosma03g26780.v3.1, Zosma05g28470.v3.1