Basic Information
Locus ID:
gene-QOZ80_2AG0115470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 13737070 | 13741633 | - | gene-QOZ80_2AG0115470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 46,623.37 Da | 41.79 | 107.28 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 23 | 417 | 2.75809E-44 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 11 | 382 | 1.0E-25 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 420 | 2.22E-37 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 425 | 6.5E-39 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 10 | 434 | 11.228614 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 85 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 366 | 389 | 3.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 306 | 327 | 3.6E-6 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 3.6E-6 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_025793849.1 | hippocampus abundant transcript 1 protein isoform X1 [Panicum hallii] | 0 |
| Q96MC6 | Hippocampus abundant transcript 1 protein OS=Homo sapiens OX=9606 GN=MFSD14A PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0MRF0 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG467200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology