Basic Information
Locus ID:
gene-QOZ80_2AG0115010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 13109382 | 13125764 | + | gene-QOZ80_2AG0115010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 24,488.76 Da | 47.41 | 92.59 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 1 | 67 | 1.40148E-37 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 3 | 50 | 6.6E-27 | IPR002100 |
| Pfam | PF01486 | K-box region | 76 | 163 | 8.7E-24 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 1 | 69 | 2.49E-28 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 7 | 88 | 7.7E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 53 | 3.1E-31 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 54 | 28.034267 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 80 | 170 | 14.116346 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 16 | 31 | 2.4E-18 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 31 | 52 | 2.4E-18 | IPR002100 |
| Coils | Coil | Coil | 136 | 166 | - | - |
| Coils | Coil | Coil | 73 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_004983814.1 | MADS-box transcription factor 56 [Setaria italica] | 0 |
| A2Z9Q7 | MADS-box transcription factor 56 OS=Oryza sativa subsp. indica OX=39946 GN=MADS56 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0C4MKI0 | MADS-box protein OS=Zoysia matrella OX=38722 GN=SS8 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology