Basic Information
Locus ID:
gene-QOZ80_2AG0114220
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 12328046 | 12331890 | - | gene-QOZ80_2AG0114220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 55,323.35 Da | 49.76 | 81.83 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 228 | 286 | 3.9E-7 | IPR020683 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 3.2E-16 | - |
| Pfam | PF00023 | Ankyrin repeat | 186 | 216 | 7.8E-6 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.03 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 281 | 2.19E-49 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 384 | 1.21E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 393 | 2.5E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 139 | 7.3E-33 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 279 | 3.3E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 8.4E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 228 | 260 | 0.0026 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0078 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 2.8 | IPR002110 |
| SMART | SM00248 | ANK_2a | 185 | 214 | 5.6E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 327 | 376 | 5.5E-4 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 228 | 254 | 10.87314 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 377 | 10.084539 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.44055 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 214 | 12.03652 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 217 | 12.71613 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 228 | 254 | 10.842607 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 14.318218 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 342 | 351 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 201 | 215 | 3.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 45 | 60 | 3.1E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 494 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_052133807.1 | probable E3 ubiquitin-protein ligase XBOS33 [Oryza glaberrima] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | B8BHX4 | RING-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_34359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology