HalophFGD

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Basic Information
Locus ID: gene-QOZ80_2AG0113350
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: endonuclease activity
Maps and Mapping Data
Chromosome Start End Strand ID
chr2A 11563104 11564066 - gene-QOZ80_2AG0113350
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.30 35,532.97 Da 23.47 88.84 0.09
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 51 99 3.7E-20 IPR002885
Pfam PF13041 PPR repeat family 122 169 1.8E-16 IPR002885
Pfam PF13041 PPR repeat family 260 307 5.4E-8 IPR002885
Pfam PF01535 PPR repeat 19 47 0.044 IPR002885
Pfam PF13041 PPR repeat family 190 238 4.2E-8 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 2 112 1.9E-31 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 113 219 2.0E-31 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 222 314 2.7E-21 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 124 157 3.6E-11 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 88 122 9.7E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 53 87 1.8E-12 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 264 296 3.3E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 229 261 7.3E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 158 192 7.4E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 194 227 1.3E-4 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 226 260 10.490022 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 191 225 10.468099 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 156 190 11.531345 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 16 50 8.95544 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 51 85 14.27167 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 121 155 13.416689 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 86 120 10.796938 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 261 295 9.656963 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_022685415.1 protein Rf1, mitochondrial [Setaria italica] 0
TrEMBL A0A1E5VY82 Protein Rf1, mitochondrial OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008921 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.4AG0007790
Arecaceae Cocos nucifera 1 scaffold010752G000010
Asparagaceae Asparagus officinalis 1 AsparagusV1_09.1150.V1.1
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ...
gene.Cymno15g00330
Hydrocharitaceae Thalassia testudinum 5 gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ...
gene.Thate08g21140, gene.Thate09g04990
Poaceae Echinochloa crus-galli 20 AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ...
BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae Eleusine coracana subsp. coracana 20 gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ...
gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae Hordeum vulgare 21 HORVU.MOREX.r3.1HG0005110.1.CDS1 ...
HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae Lolium multiflorum 45 gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ...
gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae Oryza coarctata 12 Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ...
Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae Oryza sativa 14 LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ...
LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae Paspalum vaginatum 17 gene-BS78_01G189400, gene-BS78_05G011700 ...
gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae Puccinellia tenuiflora 2 Pt_Chr0500284, Pt_Chr0500285
Poaceae Sporobolus alterniflorus 22 Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ...
Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae Thinopyrum elongatum 20 Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ...
Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae Triticum dicoccoides 49 gene_TRIDC1AG003330, gene_TRIDC1AG003340 ...
gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae Triticum aestivum 126 TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ...
TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae Zea mays 9 Zm00001eb065260_P001, Zm00001eb114490_P001 ...
Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae Zoysia japonica 5 nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ...
nbis-gene-7954, nbis-gene-7966
Poaceae Zoysia macrostachya 7 Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ...
Zma_g19498, Zma_g21114
Posidoniaceae Posidonia oceanica 4 gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ...
gene.Posoc07g00950
Salicaceae Populus euphratica 1 populus_peu19919
Zosteraceae Zostera marina 4 Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ...
Zosma06g26890.v3.1
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