Basic Information
Locus ID:
gene-QOZ80_2AG0112480
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 10680641 | 10682626 | - | gene-QOZ80_2AG0112480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 73,440.16 Da | 34.57 | 93.10 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 327 | 370 | 1.3E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 533 | 580 | 3.7E-13 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 175 | 227 | 2.4E-8 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 381 | 441 | 3.1E-5 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 144 | 170 | 9.9E-6 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 619 | 650 | 9.0E-10 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 253 | 302 | 4.4E-17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 463 | 510 | 1.6E-11 | IPR002885 |
| SUPERFAMILY | SSF81901 | HCP-like | 222 | 390 | 1.96E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 246 | 4.3E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 247 | 318 | 3.7E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 319 | 389 | 1.4E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 616 | 661 | 3.4E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 408 | 528 | 1.1E-33 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 530 | 615 | 3.6E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 625 | 658 | 2.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 327 | 360 | 2.8E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 148 | 182 | 8.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 256 | 290 | 7.9E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 186 | 218 | 0.0017 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 432 | 465 | 6.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 502 | 535 | 2.9E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 219 | 247 | 4.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 571 | 604 | 8.8E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 291 | 324 | 1.5E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 537 | 570 | 7.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 361 | 394 | 4.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 468 | 500 | 7.4E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | 11.936913 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 429 | 463 | 11.662881 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | 12.901507 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 499 | 533 | 13.230347 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 181 | 216 | 9.667924 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 254 | 288 | 13.482456 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 464 | 498 | 12.33152 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 623 | 657 | 11.684803 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | 9.492543 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 534 | 568 | 11.366925 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | 10.161182 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 569 | 603 | 11.91499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | 13.142656 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 217 | 247 | 9.163705 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07290.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_002459448.2 | putative pentatricopeptide repeat-containing protein At5g59900 [Sorghum bicolor] | 0 |
| Q76C99 | Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V821 | PPR_long domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_23823 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology