Basic Information
Locus ID:
gene-QOZ80_2AG0111130
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 9555988 | 9558186 | - | gene-QOZ80_2AG0111130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 62,832.00 Da | 47.94 | 92.79 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 521 | 562 | 6.3E-7 | IPR001810 |
| Pfam | PF00646 | F-box domain | 12 | 48 | 0.0055 | IPR001810 |
| Pfam | PF08387 | FBD | 439 | 474 | 1.7E-5 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 504 | 564 | 1.7E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 48 | 1.96E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 193 | 407 | 1.02E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 511 | 561 | 1.4E-9 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02700.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_039839426.1 | uncharacterized protein LOC120699490 [Panicum virgatum] | 0 |
| Q9LZ15 | Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana OX=3702 GN=At5g02700 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9VWP0 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_14322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.1139, CH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 11 | gene-QOZ80_2AG0111130, gene-QOZ80_2BG0159870 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0296530.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G006790, Oco06G006990 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g12190.1, LOC_Os03g12200.1, LOC_Os03g12210.1 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G013590, Chr05G020180, Chr20G002810, Chr24G001980 |