Basic Information
Locus ID:
gene-QOZ80_2AG0107810
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 6544387 | 6545004 | - | gene-QOZ80_2AG0107810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 20,915.96 Da | 56.66 | 85.76 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 120 | 162 | 7.20518E-18 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 162 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 171 | 8.01E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 168 | 2.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 1.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 205 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039788948.1 | RING-H2 finger protein ATL14-like [Panicum virgatum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VCZ9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1150, CH07.928 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107810, gene-QOZ80_2BG0161430 |
| Poaceae | Oryza coarctata | 1 | Oco04G007070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G104300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013670, Chr0G033250, Chr15G023330 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50886 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12516 |