Basic Information
Locus ID:
gene-QOZ80_2AG0107800
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 6539437 | 6540015 | - | gene-QOZ80_2AG0107800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 19,835.80 Da | 56.96 | 89.11 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 120 | 162 | 1.23312E-17 | - |
| Pfam | PF13639 | Ring finger domain | 120 | 162 | 6.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 168 | 5.18E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 167 | 9.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 9.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.813844 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 30 | 5.0 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040376330.1 | probable E3 ubiquitin-protein ligase ATL44 [Oryza brachyantha] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9VEI0 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology