Basic Information
Locus ID:
gene-QOZ80_2AG0107740
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 6484524 | 6485096 | - | gene-QOZ80_2AG0107740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 21,180.76 Da | 50.74 | 105.16 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 190 | 2.6E-5 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034605702.1 | probable E3 ubiquitin-protein ligase ATL45 [Setaria viridis] | 0 |
| TrEMBL | A0A1E5VXG3 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH07.1025, AH07.1027, AH07.1028, BH07.1144, BH07.1146 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107740, gene-QOZ80_2AG0108990 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G006770, Oco04G007040, Oco04G007050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g15000.1, LOC_Os02g15010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G104000, gene-BS78_04G104100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013650, Chr0G033270, Chr15G023350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G503100, Tel1E01G503200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG052490, gene_TRIDC1BG052500 |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G311600.1.cds1, TraesCS1B02G323200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb238450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34201, nbis-gene-53144 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12514, Zma_g15401 |