Basic Information
Locus ID:
gene-QOZ80_2AG0107720
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 6447476 | 6448051 | - | gene-QOZ80_2AG0107720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 21,140.46 Da | 46.16 | 109.27 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 6.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 186 | 2.17E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 186 | 8.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 1.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.238477 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_044950768.1 | RING-H2 finger protein ATL64-like [Hordeum vulgare subsp. vulgare] | 0 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VCS7 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25074 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1022, BH07.1136, BH07.1141, CH07.914, CH07.920 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0107690, gene-QOZ80_2AG0107720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022027, gene-QYE76_048206 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G103600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013640, Chr0G033280, Chr15G023360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G344800 |
| Poaceae | Triticum aestivum | 1 | TraesCS6A02G172100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb238470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34205, nbis-gene-53142 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12513 |