Basic Information
Locus ID:
gene-QOZ80_2AG0104730
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 4186712 | 4188790 | + | gene-QOZ80_2AG0104730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 72,578.40 Da | 38.97 | 87.08 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 192 | 236 | 6.30753E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 199 | 237 | 1.1E-4 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 424 | 663 | 2.8E-33 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 377 | 663 | 5.77E-51 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 192 | 237 | 6.41E-5 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 190 | 245 | 8.7E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 460 | 678 | 4.7E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 367 | 459 | 4.4E-10 | - |
| SMART | SM00257 | LysM_2 | 125 | 173 | 1.9 | IPR018392 |
| SMART | SM00257 | LysM_2 | 193 | 237 | 0.0045 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 192 | 236 | 10.274449 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 349 | 674 | 28.456701 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025812004.1 | protein LYK5 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology