Basic Information
Locus ID:
gene-QOZ80_2AG0103690
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 3390843 | 3395156 | + | gene-QOZ80_2AG0103690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 39,994.00 Da | 47.62 | 72.76 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.82305E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 184 | 2.3E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 244 | 299 | 1.4E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 325 | 361 | 7.2E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.9E-18 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 313 | 367 | 6.38E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 194 | 1.64E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 4.14E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 307 | 4.58E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 235 | 299 | 5.9E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 139 | 189 | 5.6E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 317 | 367 | 1.3E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 1.6E-26 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.8E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 146 | 186 | 2.5E-5 | IPR015940 |
| SMART | SM00727 | CBM | 242 | 285 | 1.2E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 326 | 363 | 1.2E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 369 | 4.9E-118 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 323 | 364 | 14.691536 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.433754 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 145 | 187 | 11.82398 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 336 | 1.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 270 | 292 | 1.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 337 | 351 | 1.8E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 367 | 1.8E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 123 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_002451657.1 | ubiquitin receptor RAD23b isoform X2 [Sorghum bicolor] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5J9VA66 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_24594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology