Basic Information
Locus ID:
gene-QOZ80_2AG0101490
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 1976210 | 1978029 | + | gene-QOZ80_2AG0101490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 47,956.45 Da | 46.41 | 91.89 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 54 | 252 | 9.84872E-136 | - |
| CDD | cd18787 | SF2_C_DEAD | 263 | 393 | 3.31966E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 276 | 384 | 9.3E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 75 | 236 | 2.0E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 119 | 404 | 3.14E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 40 | 258 | 2.7E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 259 | 423 | 2.0E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 69 | 266 | 4.8E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 303 | 384 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 262 | 423 | 26.089474 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 81 | 251 | 29.471882 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 50 | 78 | 10.433057 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 197 | 205 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_002438954.1 | eukaryotic initiation factor 4A-3 [Sorghum bicolor] | 0 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 0 | |
| TrEMBL | J3L9J6 | Eukaryotic initiation factor 4A-11 OS=Oryza brachyantha OX=4533 GN=102709429 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology