Basic Information
Locus ID:
gene-QOZ80_2AG0101190
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 1744442 | 1751787 | - | gene-QOZ80_2AG0101190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 117,466.15 Da | 44.49 | 78.01 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 474 | 606 | 1.91214E-69 | - |
| CDD | cd17920 | DEXHc_RecQ | 273 | 473 | 2.46002E-104 | - |
| Pfam | PF00570 | HRDC domain | 843 | 910 | 5.0E-14 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 608 | 687 | 3.8E-15 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 287 | 453 | 6.2E-20 | IPR011545 |
| Pfam | PF09382 | RQC domain | 694 | 810 | 1.1E-20 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 492 | 596 | 2.1E-18 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 186 | 615 | 1.74E-43 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 838 | 917 | 2.62E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 472 | 737 | 7.49E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 243 | 473 | 8.7E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 694 | 806 | 7.9E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 474 | 690 | 1.3E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 834 | 920 | 2.0E-20 | IPR044876 |
| SMART | SM00487 | ultradead3 | 281 | 482 | 2.7E-34 | IPR014001 |
| SMART | SM00956 | RQC_2 | 696 | 808 | 2.0E-18 | IPR018982 |
| SMART | SM00341 | hrdc7 | 838 | 920 | 3.7E-10 | IPR002121 |
| SMART | SM00490 | helicmild6 | 516 | 597 | 7.6E-29 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 277 | 747 | 9.9E-167 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 506 | 548 | 9.71382 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 838 | 920 | 17.511457 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 293 | 466 | 23.159332 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 491 | 649 | 19.626209 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 405 | 414 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 953 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_034597887.1 | ATP-dependent DNA helicase Q-like 4A [Setaria viridis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6WJ29 | DNA helicase OS=Setaria viridis OX=4556 GN=SEVIR_1G091300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology