Basic Information
Locus ID:
gene-QOZ80_2AG0100460
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 1213304 | 1215188 | - | gene-QOZ80_2AG0100460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 33,308.86 Da | 51.16 | 81.26 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 59 | 97 | 1.87697E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 128 | 275 | 4.4E-51 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 115 | 7.34E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 114 | 279 | 3.66E-32 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 147 | 8.7E-9 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 148 | 275 | 6.0E-36 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 97 | 9.686208 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_004952021.1 | E3 ubiquitin-protein ligase SINAT2 [Setaria italica] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VDM1 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_25365 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology