Basic Information
Locus ID:
gene-QOZ80_2AG0098400
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 2951 | 4542 | + | gene-QOZ80_2AG0098400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 43,411.95 Da | 66.27 | 88.52 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 175 | 223 | 6.47631E-14 | - |
| Pfam | PF12906 | RING-variant domain | 175 | 222 | 2.8E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 225 | 3.38E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 226 | 6.2E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 174 | 223 | 1.0E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 167 | 229 | 17.425917 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 398 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039843828.1 | uncharacterized protein LOC120702988 isoform X2 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9VCP3 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_25569 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology