Basic Information
Locus ID:
gene-QOZ80_1BG0094730
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 70486479 | 70488034 | - | gene-QOZ80_1BG0094730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 40,387.43 Da | 50.45 | 76.11 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 171 | 209 | 0.089 | IPR006597 |
| Pfam | PF01753 | MYND finger | 320 | 360 | 1.1E-6 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 139 | 154 | 110.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 211 | 240 | 0.0079 | IPR006597 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 320 | 365 | 4.19E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 123 | 241 | 4.71E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 107 | 3.92E-6 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 298 | 365 | 1.4E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 110 | 297 | 1.8E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 318 | 360 | 11.187847 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_040381750.1 | F-box protein At1g67340-like isoform X1 [Oryza brachyantha] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9I3Q9 | MYND-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology