Basic Information
Locus ID:
gene-QOZ80_1BG0091050
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 68291086 | 68291760 | + | gene-QOZ80_1BG0091050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 23,708.90 Da | 65.16 | 82.81 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 140 | 183 | 4.61463E-15 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 8.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 190 | 2.02E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 185 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 6.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.40076 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 110 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18773.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034597351.1 | RING-H2 finger protein ATL73-like [Setaria viridis] | 0 |
| Q9LS99 | RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6UNL1 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G398300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.3986, BH02.4005, CH02.4034 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041010, gene-QOZ80_1BG0091050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0299850.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco01G025750, Oco02G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G347700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G003800, Chr08G021400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G601700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G377100.1.cds1, TraesCS3B02G409700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb146800_P001, Zm00001eb366740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11275, nbis-gene-28641 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11613, Zma_g9073 |