Basic Information
Locus ID:
gene-QOZ80_1BG0091030
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 68274115 | 68275353 | - | gene-QOZ80_1BG0091030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 43,872.39 Da | 46.40 | 109.27 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 9 | 84 | 2.6E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 119 | 378 | 4.32E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 84 | 1.16E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 90 | 2.5E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 107 | 391 | 4.8E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 82 | 7.6E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 89 | 27.97187 | IPR003613 |
| Coils | Coil | Coil | 124 | 144 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_039850114.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum virgatum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5W9P9 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004825 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology