HalophFGD

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Basic Information
Locus ID: gene-QOZ80_1BG0085100
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: Mitochondrial protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr1B 64451096 64458831 + gene-QOZ80_1BG0085100
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.62 191,391.11 Da 44.41 76.41 -0.45
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 1577 1716 8.48699E-65 -
Pfam PF13976 GAG-pre-integrase domain 778 844 9.2E-14 IPR025724
Pfam PF00098 Zinc knuckle 623 639 3.8E-6 IPR001878
Pfam PF00035 Double-stranded RNA binding motif 3 69 1.9E-12 IPR014720
Pfam PF00035 Double-stranded RNA binding motif 83 146 2.8E-8 IPR014720
Pfam PF00665 Integrase core domain 878 976 1.2E-11 IPR001584
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1276 1393 6.6E-45 IPR013103
Pfam PF00035 Double-stranded RNA binding motif 163 223 3.3E-5 IPR014720
Pfam PF14223 gag-polypeptide of LTR copia-type 414 548 1.8E-12 -
SUPERFAMILY SSF54768 dsRNA-binding domain-like 2 75 6.76E-17 -
SUPERFAMILY SSF54768 dsRNA-binding domain-like 82 149 1.23E-15 -
SUPERFAMILY SSF53098 Ribonuclease H-like 891 1041 1.21E-44 IPR012337
SUPERFAMILY SSF56672 DNA/RNA polymerases 1276 1684 1.38E-24 IPR043502
SUPERFAMILY SSF54768 dsRNA-binding domain-like 157 223 2.83E-10 -
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 605 646 1.57E-8 IPR036875
Gene3D G3DSA:3.30.160.20 - 75 151 1.7E-18 -
Gene3D G3DSA:4.10.60.10 - 602 651 1.5E-7 -
Gene3D G3DSA:3.30.160.20 - 1 69 6.3E-20 -
Gene3D G3DSA:3.30.160.20 - 152 231 2.8E-11 -
Gene3D G3DSA:3.30.420.10 - 857 1048 1.4E-43 IPR036397
SMART SM00358 DRBM_3 2 70 2.1E-16 IPR014720
SMART SM00343 c2hcfinal6 623 639 8.6E-5 IPR001878
SMART SM00358 DRBM_3 83 150 5.1E-9 IPR014720
SMART SM00358 DRBM_3 162 230 0.021 IPR014720
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile. 82 151 10.557354 IPR014720
ProSiteProfiles PS50994 Integrase catalytic domain profile. 870 1039 26.749821 IPR001584
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 624 639 10.361479 IPR001878
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile. 1 71 13.616169 IPR014720
MobiDBLite mobidb-lite consensus disorder prediction 1134 1190 - -
MobiDBLite mobidb-lite consensus disorder prediction 573 618 - -
MobiDBLite mobidb-lite consensus disorder prediction 291 317 - -
MobiDBLite mobidb-lite consensus disorder prediction 337 361 - -
MobiDBLite mobidb-lite consensus disorder prediction 573 588 - -
MobiDBLite mobidb-lite consensus disorder prediction 340 361 - -
MobiDBLite mobidb-lite consensus disorder prediction 1166 1185 - -
Coils Coil Coil 205 227 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 0
RefSeq XP_040254454.2 LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 0
TrEMBL Q9AY40 Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 4 Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae Brassica nigra 3 BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae Plantago ovata 2 Pov_00029076, Pov_00039561
Poaceae Echinochloa crus-galli 7 AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ...
CH03.241, CH08.965
Poaceae Eleusine coracana subsp. coracana 85 gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ...
gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae Lolium multiflorum 12 gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ...
gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae Oryza coarctata 2 Oco06G010700, Oco21G004780
Poaceae Sporobolus alterniflorus 17 Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ...
Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae Zoysia japonica 66 nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ...
nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae Zoysia macrostachya 1 Zma_g3359
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