Basic Information
Locus ID:
gene-QOZ80_1BG0081920
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 62272730 | 62277085 | + | gene-QOZ80_1BG0081920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 86,317.84 Da | 54.96 | 75.67 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 644 | 677 | 0.056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 593 | 4.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 468 | 780 | 2.54E-51 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 249 | 8.23E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 33 | 252 | 8.8E-21 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 445 | 782 | 3.4E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 686 | 725 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 553 | 593 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 550 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 635 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 741 | 780 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 639 | 677 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 500 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 240 | 10.322781 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 560 | 595 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 646 | 679 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 560 | 602 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 646 | 679 | 11.744925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 664 | 678 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 580 | 594 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 664 | 678 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 580 | 594 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 537 | 551 | 1.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| Coils | Coil | Coil | 244 | 273 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_002456276.1 | protein SPA1-RELATED 4 [Sorghum bicolor] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VID6 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_17134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology