Basic Information
Locus ID:
gene-QOZ80_1BG0081260
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 60844452 | 60845269 | - | gene-QOZ80_1BG0081260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 12,479.30 Da | 41.93 | 74.22 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 4 | 47 | 9.8E-9 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 52 | 107 | 2.1E-18 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 53 | 1.6E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 72 | 1.6E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 73 | 109 | 3.6E-18 | - |
| SMART | SM00184 | ring_2 | 5 | 47 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 5 | 48 | 11.913911 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.4 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_004969768.1 | probable E3 ubiquitin-protein ligase RZFP34 [Setaria italica] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | K3XM32 | E3 ubiquitin-protein ligase MIEL1-like OS=Setaria italica OX=4555 GN=101767222 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology