Basic Information
Locus ID:
gene-QOZ80_1BG0079360
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 59497234 | 59509849 | - | gene-QOZ80_1BG0079360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 138,946.81 Da | 48.41 | 73.21 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 296 | 424 | 6.40623E-19 | - |
| CDD | cd12108 | Hr-like | 642 | 800 | 4.39651E-28 | - |
| CDD | cd12108 | Hr-like | 39 | 165 | 1.54708E-33 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1111 | 1154 | 1.03408E-17 | - |
| Pfam | PF14599 | Zinc-ribbon | 1159 | 1216 | 4.0E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 983 | 1058 | 6.2E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 293 | 425 | 1.7E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 640 | 801 | 9.0E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 167 | 5.5E-13 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 975 | 1039 | 4.84E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1049 | 1104 | 1.01E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1110 | 1157 | 2.74E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 295 | 443 | 1.3E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 637 | 865 | 4.1E-24 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1183 | 1224 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 34 | 185 | 1.4E-34 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1107 | 1155 | 2.2E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 1112 | 1153 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1048 | 1111 | 29.432285 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1112 | 1153 | 11.235273 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 976 | 1045 | 25.430119 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 564 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_025814043.1 | zinc finger protein BRUTUS-like [Panicum hallii] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK57 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55247 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology