Basic Information
Locus ID:
gene-QOZ80_1BG0077650
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 58155789 | 58158278 | + | gene-QOZ80_1BG0077650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 30,668.64 Da | 50.84 | 66.13 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 100 | 271 | 4.11685E-88 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 104 | 201 | 4.6E-14 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 98 | 227 | 2.09E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 77 | 273 | 1.1E-64 | - |
| SMART | SM00232 | pad1_6 | 97 | 225 | 3.9E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 98 | 226 | 27.29851 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_004969373.1 | AMSH-like ubiquitin thioesterase 2 [Setaria italica] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | K3XKW5 | MPN domain-containing protein OS=Setaria italica OX=4555 GN=101782168 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology