Basic Information
Locus ID:
gene-QOZ80_1BG0069220
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 40484689 | 40490302 | - | gene-QOZ80_1BG0069220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 158,505.48 Da | 35.13 | 108.60 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 552 | 759 | 1.3597E-95 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1166 | 1386 | 2.10081E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 853 | 1143 | 1.15935E-77 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 271 | 522 | 4.55624E-71 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 378 | 501 | 4.3E-7 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1185 | 1333 | 1.1E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 857 | 1095 | 3.2E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 580 | 711 | 7.0E-16 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 853 | 1150 | 2.35E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 579 | 772 | 3.39E-50 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1161 | 1393 | 2.85E-69 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 526 | 3.4E-24 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 818 | 1149 | 3.1E-53 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 231 | 535 | 2.7E-35 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 536 | 805 | 1.2E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1151 | 1404 | 5.5E-83 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1194 | 1387 | 2.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 585 | 767 | 9.1E-15 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1168 | 1402 | 18.660925 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 270 | 514 | 20.010334 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 561 | 782 | 20.428289 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 855 | 1131 | 33.264992 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 684 | 698 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VEZ3 | ABC transporter C family member 15 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology