Basic Information
Locus ID:
gene-QOZ80_1BG0068830
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 39360127 | 39372576 | + | gene-QOZ80_1BG0068830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 67,270.76 Da | 55.03 | 82.31 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 440 | 594 | 3.53306E-90 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 115 | 212 | 2.6E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 440 | 545 | 3.4E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 442 | 571 | 4.45E-17 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 118 | 227 | 4.71E-5 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 427 | 602 | 1.7E-62 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 102 | 233 | 9.8E-29 | - |
| SMART | SM00232 | pad1_6 | 443 | 569 | 4.1E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 441 | 572 | 25.126854 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_034597004.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Setaria viridis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UC77 | MPN domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_30333 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology