Basic Information
Locus ID:
gene-QOZ80_1BG0068400
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 35247462 | 35248823 | - | gene-QOZ80_1BG0068400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 48,752.38 Da | 47.31 | 92.96 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 306 | 334 | 0.015 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 267 | 294 | 6.5E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 70 | 100 | 0.33 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 174 | 201 | 0.0063 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 42 | 67 | 0.026 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 237 | 265 | 7.6E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 343 | 367 | 5.5E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 199 | 297 | 8.0E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 37 | 122 | 2.8E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 298 | 452 | 1.2E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 123 | 198 | 4.0E-5 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 70 | 103 | 8.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 173 | 204 | 4.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 306 | 339 | 0.001 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 237 | 266 | 0.0026 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 267 | 294 | 4.3E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 344 | 367 | 2.5E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 8.549871 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | 9.525427 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 265 | 299 | 11.016164 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 68 | 102 | 10.47906 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 234 | 264 | 8.900633 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66500.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_004968836.1 | pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Setaria italica] | 0 |
| Q9FJY9 | Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E38 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SES4 | Pentatricopeptide repeat-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_57482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24052 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208140 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1305.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g015650.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0078 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0068400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0292580.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024169, gene-QYE76_025379, gene-QYE76_072021 |
| Poaceae | Oryza coarctata | 1 | Oco01G011340 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g33070.1, LOC_Os03g42650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G458200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203294, Pt_Chr0700218 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G011860, Chr12G024800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G504300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG045390 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G322700.1.cds1, TraesCS3B02G342936.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb413360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52402 |
| Salicaceae | Populus euphratica | 1 | populus_peu23603 |