Basic Information
Locus ID:
gene-QOZ80_1BG0064650
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 14836582 | 14843375 | + | gene-QOZ80_1BG0064650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 57,170.05 Da | 47.10 | 84.84 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 334 | 508 | 1.45523E-101 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 102 | 1.8E-10 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 331 | 437 | 1.5E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 334 | 464 | 5.23E-19 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 117 | 5.6E-28 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 320 | 510 | 7.4E-70 | - |
| SMART | SM00232 | pad1_6 | 333 | 461 | 2.2E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 333 | 464 | 24.665617 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_004968695.1 | AMSH-like ubiquitin thioesterase 3 [Setaria italica] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UBA4 | MPN domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_30629 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology