Basic Information
Locus ID:
gene-QOZ80_1BG0064290
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 14064427 | 14067053 | + | gene-QOZ80_1BG0064290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 75,703.76 Da | 64.88 | 68.41 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 351 | 678 | 2.4E-84 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 314 | 712 | 2.84E-118 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 306 | 713 | 4.9E-112 | IPR012334 |
| SMART | SM00710 | pbh1 | 590 | 611 | 1400.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 458 | 507 | 340.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 561 | 582 | 3.9 | IPR006626 |
| SMART | SM00710 | pbh1 | 508 | 529 | 130.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 531 | 551 | 1100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 538 | 551 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 170 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9ULV6 | Polygalacturonase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26648 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology