Basic Information
Locus ID:
gene-QOZ80_1BG0061390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 9346496 | 9348484 | + | gene-QOZ80_1BG0061390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 26,506.64 Da | 24.16 | 97.88 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 110 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 149 | 0.0045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 235 | 1.67E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 239 | 1.1E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 29 | 66 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 150 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 110 | 8.2E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 80 | 119 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 80 | 113 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 97 | 111 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 97 | 111 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 53 | 67 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 137 | 151 | 2.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_004968472.1 | zinc finger CCCH domain-containing protein 17 [Setaria italica] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UCN2 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology