Basic Information
Locus ID:
gene-QOZ80_1BG0060160
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 7961806 | 7967421 | + | gene-QOZ80_1BG0060160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 165,202.05 Da | 40.02 | 101.30 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 333 | 620 | 1.44299E-85 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 646 | 846 | 2.16808E-96 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 950 | 1244 | 2.32945E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1267 | 1487 | 4.15081E-119 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 336 | 599 | 6.7E-20 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1286 | 1434 | 2.0E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 952 | 1193 | 5.6E-31 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 664 | 798 | 2.7E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1258 | 1499 | 7.24E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 643 | 868 | 1.04E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 938 | 1250 | 6.15E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 322 | 628 | 8.11E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 302 | 628 | 2.7E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 631 | 881 | 1.7E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 912 | 1250 | 3.5E-64 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1253 | 1505 | 1.4E-76 | IPR027417 |
| SMART | SM00382 | AAA_5 | 673 | 846 | 6.8E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1295 | 1486 | 1.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 332 | 612 | 29.730291 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 952 | 1232 | 37.366314 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 646 | 869 | 23.022648 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1503 | 16.846876 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 771 | 785 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 924 | - | - |
| Coils | Coil | Coil | 907 | 927 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034596584.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6UFR8 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_5G119400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology