Basic Information
Locus ID:
gene-QOZ80_1BG0059190
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 7135288 | 7136079 | + | gene-QOZ80_1BG0059190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 29,010.89 Da | 43.07 | 86.46 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 14 | 209 | 5.4E-56 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 6 | 247 | 6.29E-51 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 166 | 3.6E-51 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 167 | 263 | 1.7E-32 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 65 | 80 | 1.2E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 155 | 175 | 1.2E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 192 | 209 | 1.2E-7 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 16 | 29 | 1.2E-7 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385856.1 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P22244 | Protein synthesis inhibitor I OS=Hordeum vulgare OX=4513 GN=RIP30 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1E5VQL8 | rRNA N-glycosylase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology