Basic Information
Locus ID:
gene-QOZ80_1BG0058130
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 6401868 | 6402803 | - | gene-QOZ80_1BG0058130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 30,114.78 Da | 56.06 | 72.36 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 187 | 1.6E-60 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 112 | 185 | 1.8E-26 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 4 | 110 | 1.2E-29 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 275 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021311754.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Sorghum bicolor] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UEV5 | Ubiquitin fusion degradation protein 1 homolog OS=Eragrostis curvula OX=38414 GN=EJB05_31625 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology