halophFGD

Basic Information

Locus ID: gene-QOZ80_1BG0056710

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1B	5188675	5189675	+	gene-QOZ80_1BG0056710

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.78	30,823.92 Da	42.55	61.59	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03145	Seven in absentia protein family	60	160	7.2E-11	IPR018121
SUPERFAMILY	SSF49599	TRAF domain-like	70	238	2.03E-24	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	66	122	1.6E-14	IPR013083
ProSiteProfiles	PS51081	Zinc finger SIAH-type profile.	70	128	13.528502	IPR013010

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0007275 (multicellular organism development)

Molecular Function:

GO:0008270 (zinc ion binding)

Cellular Component:

GO:0005737 (cytoplasm)

KEGG Pathway

KO Term:

K04506 (E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025795553.1	putative E3 ubiquitin-protein ligase SINA-like 6 [Panicum hallii]	0
TrEMBL	A0A0A8Y551	RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_1AG0007940, gene-QOZ80_1BG0056710