HalophFGD

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Basic Information
Locus ID: gene-QOZ80_1BG0056360
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: Protein of unknown function (DUF295)
Maps and Mapping Data
Chromosome Start End Strand ID
chr1B 4978970 4980385 + gene-QOZ80_1BG0056360
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.27 51,992.10 Da 39.89 72.70 -0.29
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 23 56 1.0E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 19 78 6.93E-8 IPR036047
Gene3D G3DSA:1.20.1280.50 - 19 59 3.0E-8 -
SMART SM00256 fbox_2 23 63 1.6E-4 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_034594482.1 uncharacterized protein LOC117856161 [Setaria viridis] 0
TrEMBL A0A3L6R448 DUF295 domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM08G06710 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 3 AH02.1208, AH08.1331, CH02.1010
Poaceae Eleusine coracana subsp. coracana 3 gene-QOZ80_1AG0007570, gene-QOZ80_1BG0056360 ...
gene-QOZ80_3AG0217320
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.4HG0340140.1.CDS1 ...
HORVU.MOREX.r3.4HG0340150.1.CDS1
Poaceae Sporobolus alterniflorus 3 Chr05G002560, Chr05G002570, Chr05G002580
Poaceae Thinopyrum elongatum 2 Tel4E01G107500, Tel6E01G347500
Poaceae Triticum aestivum 1 TraesCS4D02G064300.1.cds1
Poaceae Zoysia japonica 2 nbis-gene-14992, nbis-gene-7108
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.