Basic Information
Locus ID:
gene-QOZ80_1AG0048210
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 57283744 | 57286220 | + | gene-QOZ80_1AG0048210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 52,063.02 Da | 47.25 | 72.18 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 193 | 452 | 6.83589E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 322 | 8.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 452 | 1.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 367 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 453 | 7.33E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 148 | 456 | 4.2E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 413 | 452 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 196 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 5.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 239 | 0.059 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 367 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 279 | 7.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 322 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 332 | 376 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 420 | 453 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 420 | 453 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 14.084198 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 439 | 453 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_002457025.1 | protein FIZZY-RELATED 3 [Sorghum bicolor] | 0 |
| Q8LPL5 | Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=FZR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9D816 | WD_REPEATS_REGION domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology