Basic Information
Locus ID:
gene-QOZ80_1AG0045660
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 55787747 | 55790645 | - | gene-QOZ80_1AG0045660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 48,165.62 Da | 53.87 | 74.12 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 289 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 338 | 0.026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 90 | 416 | 6.11E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 87 | 416 | 1.8E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 172 | 207 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 76 | 113 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 338 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 418 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 254 | 294 | 0.012 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | K3XHQ6 | WD_REPEATS_REGION domain-containing protein OS=Setaria italica OX=4555 GN=101771649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology