Basic Information
Locus ID:
gene-QOZ80_1AG0044730
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 55120454 | 55122019 | - | gene-QOZ80_1AG0044730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 40,345.46 Da | 49.50 | 75.85 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 207 | 236 | 0.0079 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 135 | 150 | 23.0 | IPR006597 |
| Pfam | PF01753 | MYND finger | 323 | 363 | 2.7E-6 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 167 | 205 | 0.036 | IPR006597 |
| SUPERFAMILY | SSF81383 | F-box domain | 51 | 103 | 6.76E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 121 | 237 | 1.44E-13 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 323 | 369 | 2.09E-8 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 318 | 370 | 4.2E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 107 | 303 | 2.5E-21 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 321 | 363 | 11.248342 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_004971088.1 | F-box protein At1g67340 [Setaria italica] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VKM2 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_17914 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology