Basic Information
Locus ID:
gene-QOZ80_1AG0044430
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 54954103 | 54954996 | - | gene-QOZ80_1AG0044430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 32,427.79 Da | 76.68 | 48.82 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 249 | 286 | 1.3736E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 248 | 292 | 9.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 293 | 8.72E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 297 | 9.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 249 | 286 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 287 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 201 | - | - |
| Coils | Coil | Coil | 171 | 199 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_044972634.1 | uncharacterized protein LOC123440124 [Hordeum vulgare subsp. vulgare] | 0 |
| TrEMBL | A0A0E0JST8 | RING-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology