Basic Information
Locus ID:
gene-QOZ80_1AG0043280
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 54277020 | 54281273 | - | gene-QOZ80_1AG0043280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 45,664.42 Da | 44.65 | 87.56 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 68 | 330 | 2.5E-116 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 333 | 388 | 1.96E-6 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 69 | 330 | 7.65E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 399 | 6.3E-110 | IPR027417 |
| SMART | SM00382 | AAA_5 | 118 | 291 | 2.0E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 65 | 386 | 7.2E-133 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 96 | 255 | 36.999817 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 264 | 335 | 26.220436 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 276 | 284 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 154 | 183 | 1.4E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 306 | 335 | 1.4E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 188 | 217 | 1.4E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 360 | 377 | 1.4E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 273 | 301 | 1.4E-73 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 226 | 255 | 1.4E-73 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 65 | 392 | 42.614174 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 63 | - | - |
| Coils | Coil | Coil | 371 | 391 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_004970942.1 | DNA repair protein recA homolog 3, mitochondrial [Setaria italica] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9P709 | IDP355 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology