Basic Information
Locus ID:
gene-QOZ80_1AG0040980
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 52817079 | 52818290 | - | gene-QOZ80_1AG0040980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 42,649.99 Da | 49.60 | 109.80 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 54 | 8.15694E-21 | - |
| Pfam | PF04564 | U-box domain | 9 | 79 | 8.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 78 | 7.07E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 186 | 366 | 1.84E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 78 | 6.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 79 | 387 | 5.3E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 76 | 6.5E-27 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 267 | 310 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 83 | 31.660526 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_039850114.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum virgatum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6RLF9 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM13G14360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology