Basic Information
Locus ID:
gene-QOZ80_1AG0040470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 52492344 | 52501904 | - | gene-QOZ80_1AG0040470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 82,326.23 Da | 44.17 | 83.94 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 270 | 386 | 2.62942E-21 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 537 | 598 | 7.3E-10 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 271 | 388 | 2.4E-10 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 665 | 725 | 6.3E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 659 | 736 | 7.44E-10 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 536 | 599 | 1.09E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 157 | 411 | 1.17E-23 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 532 | 603 | 1.7E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 155 | 414 | 5.4E-29 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 661 | 728 | 1.3E-7 | - |
| SMART | SM00577 | forpap2 | 219 | 395 | 9.4E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 535 | 599 | 4.9E-9 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 660 | 726 | 4.2E-5 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 160 | 408 | 18.481529 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 652 | 727 | 10.727289 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 534 | 600 | 12.523735 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 581 | 601 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_039811130.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Panicum virgatum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T0S353 | protein-serine/threonine phosphatase OS=Panicum virgatum OX=38727 GN=PVAP13_5NG107400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology