Basic Information
Locus ID:
gene-QOZ80_1AG0040000
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 52194347 | 52196576 | - | gene-QOZ80_1AG0040000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 25,094.44 Da | 49.12 | 65.56 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 115 | 166 | 1.3E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 169 | 1.34E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 174 | 1.0E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 114 | 167 | 1.8E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 107 | 173 | 16.746441 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| Coils | Coil | Coil | 27 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_039849978.1 | uncharacterized protein LOC120708669 [Panicum virgatum] | 0 |
| TrEMBL | A0A3L6RKF6 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G13440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology