Basic Information
Locus ID:
gene-QOZ80_1AG0035780
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
translation initiation factor activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 49463437 | 49470058 | + | gene-QOZ80_1AG0035780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 78,425.80 Da | 37.05 | 81.18 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 406 | 686 | 2.21998E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 566 | 604 | 6.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 520 | 1.1E-7 | IPR001680 |
| Pfam | PF00069 | Protein kinase domain | 35 | 311 | 1.8E-51 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 526 | 562 | 2.3E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 442 | 478 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 398 | 685 | 4.88E-65 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 325 | 1.75E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 126 | 334 | 1.3E-52 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 386 | 520 | 9.8E-30 | IPR015943 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 4 | 105 | 7.9E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 690 | 2.2E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 439 | 478 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 523 | 562 | 4.0E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 436 | 0.0056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 6.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 481 | 520 | 9.3E-9 | IPR001680 |
| SMART | SM00220 | serkin_6 | 34 | 320 | 2.5E-48 | IPR000719 |
| SMART | SM00320 | WD40_4 | 607 | 645 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 613 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 488 | 529 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 488 | 522 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 445 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 607 | 12.182859 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 34 | 320 | 38.011284 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 530 | 571 | 17.359182 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 446 | 487 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 446 | 480 | 9.783781 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 530 | 567 | 13.421944 | - |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 167 | 179 | - | IPR008271 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 549 | 563 | - | IPR019775 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 40 | 63 | - | IPR017441 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 591 | 605 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 549 | 563 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 591 | 605 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 507 | 521 | 1.3E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 392 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00960.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025811013.1 | uncharacterized protein LOC112888863 isoform X2 [Panicum hallii] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A835ATW0 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_051815 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0035780, gene-QOZ80_1BG0085790 |