Basic Information
Locus ID:
gene-QOZ80_1AG0035750
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 49446823 | 49449091 | - | gene-QOZ80_1AG0035750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 71,242.81 Da | 44.39 | 85.67 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 216 | 513 | 2.0E-94 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 133 | 1.2E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 117 | 5.02E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 172 | 1.0E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 136 | 2.1E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 216 | 537 | 93.328629 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 10.861095 | IPR000210 |
| Coils | Coil | Coil | 598 | 618 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_034593863.1 | BTB/POZ domain-containing protein At5g03250 [Setaria viridis] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6V0G3 | BTB/POZ domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G344600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology