Basic Information
Locus ID:
gene-QOZ80_1AG0035730
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 49434361 | 49440348 | + | gene-QOZ80_1AG0035730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 90,936.01 Da | 34.70 | 79.83 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 10 | 262 | 2.68247E-65 | - |
| Pfam | PF13925 | con80 domain of Katanin | 665 | 823 | 1.6E-44 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 214 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 130 | 2.6E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 172 | 3.3E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 88 | 1.6E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 295 | 2.09E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 93 | 172 | 1.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 92 | 1.7E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 302 | 1.0E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 9.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 46 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 255 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 175 | 214 | 8.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 172 | 1.5E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 181 | 17.827036 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 223 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 13.791033 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 182 | 217 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 15.120162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 90 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 15.922199 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 55 | 10.374778 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 201 | 215 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 159 | 173 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 75 | 89 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 201 | 215 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 159 | 173 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 117 | 131 | 2.9E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 2 | 826 | 19.226048 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 644 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025817912.1 | katanin p80 WD40 repeat-containing subunit B1 homolog [Panicum hallii] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HR27 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Panicum hallii OX=206008 GN=PAHAL_5G135000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology