Basic Information
Locus ID:
gene-QOZ80_1AG0034930
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 48683776 | 48699595 | - | gene-QOZ80_1AG0034930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 130,234.71 Da | 47.62 | 77.03 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 50 | 173 | 6.73106E-34 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 191 | 519 | 1.34719E-164 | - |
| Pfam | PF00917 | MATH domain | 57 | 175 | 1.0E-17 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1090 | 9.5E-49 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 193 | 514 | 3.9E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 618 | 874 | 2.3E-72 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 544 | 6.67E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 179 | 2.94E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 683 | 799 | 7.0E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 1.6E-25 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 190 | 518 | 1.8E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 47 | 189 | 2.6E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 51 | 154 | 7.4E-16 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 193 | 517 | 40.489513 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 49 | 173 | 34.863281 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 194 | 209 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 433 | 450 | - | IPR018200 |
| Coils | Coil | Coil | 537 | 557 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025815035.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8IJY3 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_5G142300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology